Publications
Selected publications in reverse chronological order.
Improving RNA Secondary Structure Prediction Through Expanded Training Data
C. J. Langeberg, T. Kim, R. Nagle, C. Meredith, D. A. Garuadapuri, J. A. Doudna†, J. H. D. Cate†
NeurIPS AI4Science Workshop (Under Review for RNA Journal), 2024
Link
Pesti-Gen: Unleashing a Generative Molecule Approach for Toxicity-Aware Pesticide Design
T. Kim *, W. Seo * IEEE EMBC 2025(Oral), RECOMB 2025(Poster), 2025
Link
SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations
T. Kim, S. Nam*, J. H. D. Cate†, C. J. Langeberg†
Under Review
Link
Towards Explainable Inverse Design for Photonics via Integrated Gradients
J. Park , T. Kim * Et al. *AAAI XAI4science Workshop 2026 Link
A Knowledge-Component-Based Methodology for Evaluating AI Assistants
L. Qi, J. D. Zamfirescu-Pereira, T. Kim, B. Hartmann, J. DeNero, N. Norouzi
ACM CompEd 2025
Link